Κλάδος: Διαφορά μεταξύ των αναθεωρήσεων

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Restructuring and changing large chunks.
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[[File:Monophyletic.svg|thumb|334px|A vertical cladogram showing one clade, ''vertebrata'', in which are nested others. Shown in blue is the clade ''reptilia''. As the traditional Linnaean taxonomic class [[Reptilia]] does not include ''Aves'' (birds), that class does not form a clade.]]
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A '''clade''' (from [[ancient Greek]] ''{{Polytonic|κλάδος}}'', ''klados'', "branch") is a technical term coined by [[Germany|German]] biologist [[Willi Henning]] and used in biological [[systematics]] to signify a single "branch" on the "[[Tree of Life]]", a group composed of a single ancestor and all its descendants.<ref>Henning, W. (1959): Grundzüge einer Theorie der phylogenetischen Systematik. ''Deutscher Zentralverlag'', [[Berlin]].</ref> The idea that such a "natural group" of organisms should be grouped together and given a [[Taxonomy|taxonomic]] name is central to [[biological classification]]. In [[cladistics]] (that takes it's name from the term), clades are the only acceptable units
 
==Definitions==
===Clade and ancestor===
A clade is termed monophyletic, meaning it contains one ancestor, all its descendants, and only its descendants.<ref group=note>
A semantic case has been made that the name should be "holophyletic," but this term has not yet acquired widespread use. For more information, see ''[[Holophyletic]]''</ref><ref>{{cite journal
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| page = 217 }}</ref> In principle, the ancestor is an individual, but in [[Sexual reproduction|sexually reproducing]] species, there will always be at least two ancestors, and in virtually all instances there will be an influx of genes from the rest of the [[gene pool]] in the descendant lines. The individual ancestor is thus often a theoretical construct, and in practical terms the ancestor of a clade of sexual organisms is a [[species]] or in the best cases a [[population]]. The common ancestor of any group of reasonable size and most of that ancestor's descendants have typically been long extinct.<ref group=note>This may not be true in very small and recent clades, where the common ancestor and all descendants are still living.</ref> It is not necessary for a clade to contain any living representatives.
 
===Clade names===
Contrary to the Linnaean systems where taxons are ''defined'' by describing key traits (]]apomorphy|apomorphies]]), cladisc taxons (clades) are ''named''. Three methods of defining clades have been proposed in cladistics: node-, stem-, and apomorphy-based:
 
* In node-based naming, taxon name A refers to the least inclusive clade containing X and Y.
* In stem-based naming, A would refer to the most inclusive clade containing X and Y, but not Z.
* In apomorphy (derived feature)-based naming, A would refer to the clade identified by a feature synapomorphic (sharing a derivation) with a feature in specimen (taxon) X. This definition is basically similar to the Linnaean system.
 
Differences between a Linnaean/apomorphy-based clades and a node-based ones become obvious when the phylogenetic hypothesis changes. When two species previously considered closely related are found to belong to different groups (e.g. [[panda]] and [[red panda]]), one of the species will be taken out of the Linnaean unit (in this case the [[Ursidae|bear family]]) and transfered to a more appropriate unit or given it's own (the [[Ailuridae]]). In cladistics, the unit panda + red panda remain, but the clade is now known to contain all [[Ursidae|bears]] as well as [[Mustelidae|mustelids]], [[Procyonidae|racoons and kind]], [[skunk]]s, [[Pinniped|seals]].<ref>[http://journals.cambridge.org/action/displayAbstract?fromPage=online&aid=285902 Wesley-Hunt, Gina D., and John J. Flynn (2005). "Phylogeny of the Carnivores". Journal of Systematic Palaeontology no 3: pp 1-28.]</ref>
 
===Clades as constructs===
In cladistics, the clade is a hypothetical construct based on experimental data. Clades are found using multiple (sometimes hundreds) of traits from a number of species (or specimens) and [[analysis|analysing]] them [[statistics|statistically]] to find the most likely phylogenetic tree for the group. Although similar in some ways to a [[biological classification]] of species, the method is statistical and more open to scrutiny than traditional methods. Although taxonomists use clades as a tool in classification where feasible the taxonomic [[tree of life]] is not the same as the cladistic. The traditional genus, family, etc. names are not necessarily clades; though they are likely to be.
 
==Taxonomy and systematics==
Ever since [[Charles Darwin|Darwin]] showed that all organisms share common ancestry, taxonomy has consistently attempted to represent and reflect the [[evolutionary history of life|evolutionary history of organisms]]. The [[DNA]] and [[RNA]] analysis used in modern [[molecular biology]] has greatly helped in illuminating this history by providing large amounts of new [[phylogenetic]] information which was previously unavailable to taxonomists. These techniques of study are known as [[molecular phylogenetics]], and they have given rise to the modern disciplines of [[cladistics]] and [[phylogenetic tree|phylogenetic systematics]].
 
This new information and new insights have made very clear what the limitations of the old Linnaean system of taxonomy were and are. As a result, many taxonomists are gradually revising in radical ways the taxonomy of the groups that they study. For an example of a taxonomy (in this case a taxonomy of the [[gastropod]]s) which has been ''partially'' revised in order to incorporate insights from molecular work, see [[Taxonomy of the Gastropoda (Bouchet & Rocroi, 2005)]].
 
==Updating taxonomy==
The idea of "clade" did not exist in pre-[[Charles Darwin|Darwinian]] [[Linnaean taxonomy]], which was based only on [[morphology (biology)|morphological]] similarities between organisms, though many of the better known animal groups in Linnaeus' original [[Systema Naturae]] (notably the [[vertebrate]]s) represent clades. With the publication of Darwin's [[Evolution|theory of evolution]] in 1859, taxonomy gained a theoretical basis, and the idea that systematic units represent branches on the evolutionary [[Tree of Life]] was born. In the century and a half since then, taxonomists have worked to make the taxonomic system reflect evolution. However, as the Tree of Life branches rather unevenly, the [[hierarchy]] of the Linnaean system does not always lend itself well to represent clades. When it comes to [[Nomenclature#Biology|naming]], [[cladistics]] and [[Linnaean taxonomy]] are not always compatible. Particularly higher level taxons in Linnaean taxonomy often represent [[evolutionary grade]]s rather than clades, i.e. clades where one or two sub-branches have been excluded. Typical examples include [[Osteichthyes|bony fishes]], who include the ancestor of [[tetrapoda|tetrapods]], and [[reptiles]], ancestral to both [[bird]]s and [[mammal]]s.<ref group=note>The term "reptile" is here to be understood as traditionally defined, e.g. Romer & Parson (1985): ''The Vertebrate Body.'' (6th ed.) Saunders, Philadelphia. There are other (cladistic) definitions of "reptile" that exclude the first [[amniote]]s and the [[synapsid]] line, see [[Sauropsida]].</ref>
 
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In most instances the two systems are not at odds, however. The cladistic statement, that the clade Lobopodia contains (among others) the Arthropoda, Tardigrada and Onychophora, is factually identical to the Linnaean evolutionary statement that the group Lobopodia is ancestral to the phyla Arthropoda, Tardigrada and Onychophora. The difference is one of semantics rather than phylogeny.
 
== Defining clade names ==
Since taxonomy intends to reflect evolutionary relationships, in order to be valid in evolutionary terms a taxon must be monophyletic—that is, it must be a clade. The definition of clades differ somewhat between Linnaean and cladistic nomenclature. Linnaean units are defined by a small number of key traits. Three methods of defining clades have been proposed in cladistics: node-, stem-, and apomorphy-based:
 
* In node-based naming, taxon name A refers to the least inclusive clade containing X and Y.
* In stem-based naming, A would refer to the most inclusive clade containing X and Y, but not Z.
* In apomorphy (derived feature)-based naming, A would refer to the clade identified by a feature synapomorphic (sharing a derivation) with a feature in specimen (taxon) X. This definition is basically similar to the Linnaean system.
 
Differences between a Linnaean or an apomorphy-based clade and a node-based one become obvious when the phylogenetic hypothesis changes.
 
Here is an example comparing the traditional Linnaean approach to a node-based naming definition:
*Suppose that all we want to do is to name a clade ("A"), containing X and Y. In the Linnaean system we would assign all taxa to the relevant categories species, genus, and family, and then designate type species. No explicit reference to the actual phylogeny is made when these categories are used. The clade A would then be accompanied by a short definition of the "defining trait" (apomorphy). The node-based alternative is started with an explicit reference to evolutionary history, and nothing but the clade containing X and Y needs to be named. When the hypothesis of relationship changes, the phylogenetic alternative is cleaner and more explicit about what it refers to.
 
== See also ==
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